1CA7 Cytokine date Feb 25, 1999
title Macrophage Migration Inhibitory Factor (Mif) With Hydroxphenylpyruvate
authors J.B.Lubetsky, E.Lolis
compound source
Molecule: Protein (Macrophage Migration Inhibitory Factor)
Chain: A, B, C
Synonym: Mif, Glycosylation-Inhibiting Factor
Engineered: Yes
Other_details: Complexed With Hydroxyphenylpyruvate
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11b
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.850 68.040 87.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ENO enzyme
related structures by homologous chain: 1FIM, 1P1G
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referencePro-1 of macrophage migration inhibitory factor functions as a catalytic base in the phenylpyruvate tautomerase activity., Lubetsky JB, Swope M, Dealwis C, Blake P, Lolis E, Biochemistry 1999 Jun 1;38(22):7346-54. PMID:10353846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1ca7.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1CA7
  • CSU: Contacts of Structural Units for 1CA7
  • Likely Quarternary Molecular Structure file(s) for 1CA7
  • Retrieve 1CA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CA7 from S2C, [Save to disk]
  • View 1CA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CA7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CA7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ca7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ca7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ca7c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1ca7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ca7_B] [1ca7_A] [1ca7] [1ca7_C]
  • SWISS-PROT database: [P14174]
  • Domain organization of [MIF_HUMAN] by SWISSPFAM
  • Other resources with information on 1CA7
  • Community annotation for 1CA7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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