1CDF Receptor date Mar 26, 1996
title Three-Dimensional Theoretical Model Of The Ligand Binding Domain Of The Human B Cell Recptor Cd40
authors J.Bajorath
compound source
Molecule: B-Cell Surface Antigen Cd40
Chain: A
Fragment: Extracellular Region, Residues 24 - 144
Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Primary referenceConstruction and analysis of a detailed three-dimensional model of the ligand binding domain of the human B cell receptor CD40., Bajorath J, Aruffo A, Proteins 1997 Jan;27(1):59-70. PMID:9037712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1CDF
  • SEQRES to COORDINATES correlation for 1CDF from S2C, [Save to disk]
  • View 1CDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CDF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1cdf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P25942]
  • Domain organization of [TNR5_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1CDF with the sequences similar proteins can be viewed for 1CDF's classification [TNR5_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TNR5_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1CDF
  • Community annotation for 1CDF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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