1CDZ Dna Binding Protein date Mar 04, 1999
title Brct Domain From Dna-Repair Protein Xrcc1
authors X.Zhang, S.Morera, P.Bates, P.Whitehead, A.Coffer, K.Hainbucher, R.Nash, M.Sternberg, T.Lindahl, P.Freemont
compound source
Molecule: Protein (Dna-Repair Protein Xrcc1)
Chain: A
Fragment: C-Terminal Brct Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
symmetry Space Group: P 31 2 1
R_factor 0.224 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.800 100.800 72.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceStructure of an XRCC1 BRCT domain: a new protein-protein interaction module., Zhang X, Morera S, Bates PA, Whitehead PC, Coffer AI, Hainbucher K, Nash RA, Sternberg MJ, Lindahl T, Freemont PS, EMBO J 1998 Nov 2;17(21):6404-11. PMID:9799248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1cdz.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1CDZ
  • Likely Quarternary Molecular Structure file(s) for 1CDZ
  • Retrieve 1CDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CDZ from S2C, [Save to disk]
    • View 1CDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1CDZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CDZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cdza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cdz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cdz_A]
  • SWISS-PROT database: [P18887]
  • Domain organization of [XRCC1_HUMAN] by SWISSPFAM
  • Domain found in 1CDZ: [BRCT ] by SMART
  • Alignments of the sequence of 1CDZ with the sequences similar proteins can be viewed for 1CDZ's classification [XRCC1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [XRCC1_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1CDZ
  • Community annotation for 1CDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2010
    Bioinformatics Unit
    Weizmann Institute of Science