1CF7 Transcription Dna date Mar 24, 1999
title Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp
authors N.Zheng, E.Fraenkel, C.O.Pabo, N.P.Pavletich
compound source
Molecule: Dna (5'- D(Aptptptptpcpgpcpgpcpgpgptptptpt)-3');
Chain: C
Fragment: Adenovirus Type 5 E2 Promoter E2f-Binding Site
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Tpapapapapcpcpgpcpgpcpgpapapapa)-3');
Chain: D
Fragment: Adenovirus Type 5 E2 Promoter E2f-Binding Site
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Transcription Factor E2f-4)
Chain: A
Fragment: Dna-Binding Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pgex-4t3

Molecule: Protein (Transcription Factor Dp-2)
Chain: B
Fragment: Dna-Binding Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pgex-4t3
symmetry Space Group: P 31 2 1
R_factor 0.223 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.300 101.300 73.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP., Zheng N, Fraenkel E, Pabo CO, Pavletich NP, Genes Dev 1999 Mar 15;13(6):666-74. PMID:10090723
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1cf7.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1CF7
  • Likely Quarternary Molecular Structure file(s) for 1CF7
  • Retrieve 1CF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CF7 from S2C, [Save to disk]
  • View 1CF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CF7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CF7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cf7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1cf7b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1cf7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cf7_B] [1cf7_C] [1cf7_D] [1cf7] [1cf7_A]
  • SWISS-PROT database: [Q16254] [Q14188]
  • Domain organization of [E2F4_HUMAN] [TFDP2_HUMAN] by SWISSPFAM
  • Domain found in 1CF7: [E2F_TDP ] by SMART
  • Other resources with information on 1CF7
  • Community annotation for 1CF7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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