1CIT Transcription Dna date Apr 05, 1999
title Dna-Binding Mechanism Of The Monomeric Orphan Nuclear Receptor Ngfi-B
authors G.Meinke, P.B.Sigler
compound source
Molecule: Dna (5'- D(Cpcpgpapapapapgpgptpcpaptpgpcpg)-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Cpgpcpaptpgpapcpcptptptptpcpgpg)-3');
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Orphan Nuclear Receptor Ngfi-B)
Chain: A
Fragment: Dna-Binding Domain And C-Terminal Extension
Synonym: Ngfi-B
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Brain
Cellular_location: Nucleus
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet11a
symmetry Space Group: P 1 21 1
R_factor 0.219 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.420 34.240 56.260 90.00 109.13 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ZN enzyme
related structures by homologous chain: 1R0N, 1YNW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B., Meinke G, Sigler PB, Nat Struct Biol 1999 May;6(5):471-7. PMID:10331876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1cit.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1CIT
  • CSU: Contacts of Structural Units for 1CIT
  • Likely Quarternary Molecular Structure file(s) for 1CIT
  • Structure Factors (46 Kb)
  • Retrieve 1CIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CIT from S2C, [Save to disk]
  • Re-refined 1cit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CIT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CIT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cita_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cit from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cit_B] [1cit_C] [1cit] [1cit_A]
  • SWISS-PROT database: [P22829]
  • Domain organization of [NR4A1_RAT] by SWISSPFAM
  • Domain found in 1CIT: [ZnF_C4 ] by SMART
  • Other resources with information on 1CIT
  • Community annotation for 1CIT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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