1CJ1 Signaling Protein date Apr 21, 1999
title Growth Factor Receptor Binding Protein Sh2 Domain (Human) Co With A Phosphotyrosyl Derivative
authors J.Rahuel
compound source
Molecule: Protein (Growth Factor Receptor-Bound Protein 2)
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Sh2 Domain
Synonym: Grb2-Sh2
Engineered: Yes
Other_details: Complexed With Phosphotyrosyl Derivative
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.305 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.800 93.300 232.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand C78 BindingDB enzyme
Primary referenceStructure-based design, synthesis, and X-ray crystallography of a high-affinity antagonist of the Grb2-SH2 domain containing an asparagine mimetic., Furet P, Garcia-Echeverria C, Gay B, Schoepfer J, Zeller M, Rahuel J, J Med Chem 1999 Jul 1;42(13):2358-63. PMID:10395476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (1cj1.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1cj1.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (1cj1.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (1cj1.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (1cj1.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (1cj1.pdb6.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1CJ1
  • CSU: Contacts of Structural Units for 1CJ1
  • Likely Quarternary Molecular Structure file(s) for 1CJ1
  • Structure Factors (246 Kb)
  • Retrieve 1CJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CJ1 from S2C, [Save to disk]
  • Re-refined 1cj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CJ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CJ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cj1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1cj1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1cj1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1cj1d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1cj1e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1cj1f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1cj1g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1cj1h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1cj1i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1cj1j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1cj1k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1cj1l_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cj1_B] [1cj1_D] [1cj1_A] [1cj1_C] [1cj1] [1cj1_K] [1cj1_L] [1cj1_E] [1cj1_F] [1cj1_J] [1cj1_I] [1cj1_H] [1cj1_G]
  • SWISS-PROT database: [P62993]
  • Domain organization of [GRB2_HUMAN] by SWISSPFAM
  • Domain found in 1CJ1: [SH2 ] by SMART
    • Other resources with information on 1CJ1
  • Community annotation for 1CJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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