1CKP Hormone Growth Factor date Jul 14, 1998
title Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor Purvalanol B
authors N.S.Gray, A.M.W.H.Thunnissen, P.G.Schultz, S.H.Kim
compound source
Molecule: Protein (Cyclin-Dependent Protein Kinase 2)
Chain: A
Synonym: Cdk2
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Sf9
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.550 71.350 72.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand EDO, PVB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1DM2, 1PYE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExploiting chemical libraries, structure, and genomics in the search for kinase inhibitors., Gray NS, Wodicka L, Thunnissen AM, Norman TC, Kwon S, Espinoza FH, Morgan DO, Barnes G, LeClerc S, Meijer L, Kim SH, Lockhart DJ, Schultz PG, Science 1998 Jul 24;281(5376):533-8. PMID:9677190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1ckp.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1CKP
  • CSU: Contacts of Structural Units for 1CKP
  • Likely Quarternary Molecular Structure file(s) for 1CKP
  • Retrieve 1CKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CKP from S2C, [Save to disk]
  • View 1CKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CKP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CKP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ckpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ckp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ckp_A] [1ckp]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1CKP: [S_TKc ] by SMART
  • Other resources with information on 1CKP
  • Community annotation for 1CKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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