1CL3 Gene Regulation date May 04, 1999
title Molecular Insights Into Pebp2cbf-Smmhc Associated Acute Leu Revealed From The Three-Dimensional Structure Of Pebp2cbf
authors M.Goger, V.Gupta, W.Y.Kim, K.Shigesada, Y.Ito, M.H.Werner
compound source
Molecule: Polyomavirus Enhancer Binding Protein 2
Chain: A
Fragment: Beta Subunit
Synonym: Pebp2cbf
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleus
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pet3a
methodSolution NMR
related structures by homologous chain: 1ILF, 2JHB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular insights into PEBP2/CBF beta-SMMHC associated acute leukemia revealed from the structure of PEBP2/CBF beta., Goger M, Gupta V, Kim WY, Shigesada K, Ito Y, Werner MH, Nat Struct Biol 1999 Jul;6(7):620-3. PMID:10404215
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (906 Kb) [Save to disk]
  • Biological Unit Coordinates (1cl3.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 1CL3
  • Retrieve 1CL3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CL3 from S2C, [Save to disk]
    • View 1CL3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CL3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CL3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cl3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cl3_A] [1cl3]
  • SWISS-PROT database: [Q13951]
  • Domain organization of [PEBB_HUMAN] by SWISSPFAM
    • Other resources with information on 1CL3
  • Community annotation for 1CL3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1CL3 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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