1CLD Transcription Regulation date Jun 06, 1995
title Dna-Binding Protein
authors K.H.Gardner, J.E.Coleman
compound source
Molecule: Cd2-Lac9
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Kluyveromyces Lactis
Organism_taxid: 28985
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand CD enzyme
related structures by homologous chain: 1AW6, 1D66
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the Kluyveromyces lactis LAC9 Cd2 Cys6 DNA-binding domain., Gardner KH, Anderson SF, Coleman JE, Nat Struct Biol 1995 Oct;2(10):898-905. PMID:7552715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1CLD
  • CSU: Contacts of Structural Units for 1CLD
  • Original NMR restraints for 1CLD from PDB
  • Retrieve 1CLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CLD from S2C, [Save to disk]
  • View 1CLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CLD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CLD, from MSDmotif at EBI
  • Genome occurence of 1CLD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cld__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1cld from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cld_A] [1cld]
  • SWISS-PROT database: [P08657]
  • Domain organization of [LAC9_KLULA] by SWISSPFAM
  • Domain found in 1CLD: [GAL4 ] by SMART
  • Other resources with information on 1CLD
  • Community annotation for 1CLD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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