1CLO Immunoglobulin date May 01, 1996
title Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7
authors M.J.Banfield, D.J.King, A.Mountain, R.L.Brady
compound source
Molecule: A5b7 Monoclonal Antibody
Chain: L
Fragment: Antigen Binding Fragment, Fab
Other_details: Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7;
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: A5b7 Monoclonal Antibody
Chain: H
Fragment: Antigen Binding Fragment, Fab
Other_details: Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.890 79.680 68.520 90.00 104.91 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1L7T, 1SY6
Primary referenceVL:VH domain rotations in engineered antibodies: crystal structures of the Fab fragments from two murine antitumor antibodies and their engineered human constructs., Banfield MJ, King DJ, Mountain A, Brady RL, Proteins 1997 Oct;29(2):161-71. PMID:9329081
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1clo.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 1CLO
  • Likely Quarternary Molecular Structure file(s) for 1CLO
  • Structure Factors (200 Kb)
  • Retrieve 1CLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CLO from S2C, [Save to disk]
  • Re-refined 1clo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CLO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CLO, from MSDmotif at EBI
  • Genome occurence of 1CLO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cloh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1cloh2, region H:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d1clol1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1clol2, region L:108-214 [Jmol] [rasmolscript] [script source]
  • Fold representative 1clo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1clo_H] [1clo_L] [1clo]
  • SWISS-PROT database: [P01868]
  • Domain organization of [IGHG1_MOUSE] by SWISSPFAM
  • Domains found in 1CLO: [IG_like] [IGv ] by SMART
  • Other resources with information on 1CLO
  • Community annotation for 1CLO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CLO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science