1CLU Hydrolase date May 03, 1999
title H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-Gt
authors M.R.Ahmadian, T.Zor, D.Vogt, W.Kabsch, Z.Selinger, A.Wittinghofer K.Scheffzek
compound source
Molecule: Transforming Protein P21h-Ras-1
Chain: A
Fragment: Catalytic Domain, Residues 1 - 166
Synonym: H-Ras, P21h-Ras, P21ras
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H-Ras-1
symmetry Space Group: P 32 2 1
R_factor 0.203 R_Free 0.261
length a length b length c angle alpha angle beta angle gamma
40.200 40.200 161.970 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand DBG, MG enzyme
related structures by homologous chain: 1LF0, 1LF5

Primary referenceGuanosine triphosphatase stimulation of oncogenic Ras mutants., Ahmadian MR, Zor T, Vogt D, Kabsch W, Selinger Z, Wittinghofer A, Scheffzek K, Proc Natl Acad Sci U S A 1999 Jun 8;96(12):7065-70. PMID:10359839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1clu.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1CLU
  • CSU: Contacts of Structural Units for 1CLU
  • Likely Quarternary Molecular Structure file(s) for 1CLU
  • Structure Factors (154 Kb)
  • Retrieve 1CLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CLU from S2C, [Save to disk]
  • Re-refined 1clu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CLU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CLU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1clua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1clu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1clu] [1clu_A]
  • SWISS-PROT database: [P01112]
  • Domain organization of [RASH_HUMAN] by SWISSPFAM
  • Domain found in 1CLU: [RAS ] by SMART
  • Other resources with information on 1CLU
  • Community annotation for 1CLU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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