1CO1 Gene Regulation date May 31, 1999
title Fold Of The Cbfa
authors M.J.Berardi, J.H.Bushweller
compound source
Molecule: Core Binding Factor Alpha
Chain: A
Fragment: Runt Domain
Synonym: Aml1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1CMO, 1IO4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Ig fold of the core binding factor alpha Runt domain is a member of a family of structurally and functionally related Ig-fold DNA-binding domains., Berardi MJ, Sun C, Zehr M, Abildgaard F, Peng J, Speck NA, Bushweller JH, Structure Fold Des 1999 Oct 15;7(10):1247-56. PMID:10545320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1CO1
  • Retrieve 1CO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CO1 from S2C, [Save to disk]
  • View 1CO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CO1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1co1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1co1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1co1] [1co1_A]
  • SWISS-PROT database: [Q01196]
  • Domain organization of [RUNX1_HUMAN] by SWISSPFAM
  • Other resources with information on 1CO1
  • Community annotation for 1CO1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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