1COO Nucleotidyl Transferase date Oct 09, 1995
title The Cooh-Terminal Domain Of Rna Polymerase Alpha Subunit
authors Y.H.Jeon, T.Negishi, M.Shirakawa, T.Yamazaki, N.Fujita, A.Ishiham Y.Kyogoku
compound source
Molecule: Rna Polymerase Alpha Subunit
Chain: A
Fragment: Cooh-Terminal Domain
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Cell_line: Nh315
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-3a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the activator contact domain of the RNA polymerase alpha subunit., Jeon YH, Negishi T, Shirakawa M, Yamazaki T, Fujita N, Ishihama A, Kyogoku Y, Science 1995 Dec 1;270(5241):1495-7. PMID:7491496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1coo.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1COO
  • Retrieve 1COO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1COO from S2C, [Save to disk]
  • View 1COO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1COO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1COO, from MSDmotif at EBI
  • Genome occurence of 1COO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1coo__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1coo] [1coo_A]
  • SWISS-PROT database: [P0A7Z4]
  • Domain organization of [RPOA_ECOLI] by SWISSPFAM
  • Other resources with information on 1COO
  • Community annotation for 1COO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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