1CP6 Hydrolase date Jun 08, 1999
title 1-Butaneboronic Acid Binding To Aeromonas Proteolytica Amino
authors C.C.Depaola, B.Bennett, R.C.Holz, D.Ringe, G.A.Petsko
compound source
Molecule: Protein (Aminopeptidase)
Chain: A
Ec: 3.4.11.10
 Organism_scientific: Vibrio Proteolyticus
Organism_taxid: 671
symmetry Space Group: P 61 2 2
R_factor 0.193 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.200 109.200 97.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand BUB, ZN enzyme Hydrolase E.C.3.4.11.10 BRENDA
related structures by homologous chain: 1AMP, 1TXR
Primary reference1-Butaneboronic acid binding to Aeromonas proteolytica aminopeptidase: a case of arrested development., De Paola CC, Bennett B, Holz RC, Ringe D, Petsko GA, Biochemistry 1999 Jul 13;38(28):9048-53. PMID:10413478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1cp6.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1CP6
  • CSU: Contacts of Structural Units for 1CP6
  • Likely Quarternary Molecular Structure file(s) for 1CP6
  • Retrieve 1CP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CP6 from S2C, [Save to disk]
    • View 1CP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CP6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CP6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cp6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cp6_A] [1cp6]
  • SWISS-PROT database: [Q01693]
  • Domain organization of [AMPX_VIBPR] by SWISSPFAM
    • Other resources with information on 1CP6
  • Community annotation for 1CP6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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