1CQQ Hydrolase date Aug 10, 1999
title Type 2 Rhinovirus 3c Protease With Ag7088 Inhibitor
authors D.Matthews, R.A.Ferre
compound source
Molecule: Type 2 Rhinovirus 3c Protease
Chain: A
Organism_scientific: Human Rhinovirus 2
Organism_taxid: 12130
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.300 65.700 77.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand AG7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-assisted design of mechanism-based irreversible inhibitors of human rhinovirus 3C protease with potent antiviral activity against multiple rhinovirus serotypes., Matthews DA, Dragovich PS, Webber SE, Fuhrman SA, Patick AK, Zalman LS, Hendrickson TF, Love RA, Prins TJ, Marakovits JT, Zhou R, Tikhe J, Ford CE, Meador JW, Ferre RA, Brown EL, Binford SL, Brothers MA, DeLisle DM, Worland ST, Proc Natl Acad Sci U S A 1999 Sep 28;96(20):11000-7. PMID:10500114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1cqq.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1CQQ
  • CSU: Contacts of Structural Units for 1CQQ
  • Likely Quarternary Molecular Structure file(s) for 1CQQ
  • Retrieve 1CQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CQQ from S2C, [Save to disk]
  • View 1CQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CQQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CQQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cqqa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cqq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cqq] [1cqq_A]
  • SWISS-PROT database: [P04936]
  • Domain organization of [POLG_HRV2] by SWISSPFAM
  • Other resources with information on 1CQQ
  • Community annotation for 1CQQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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