1CVU Oxidoreductase Peptide date Aug 24, 1999
title Crystal Structure Of Arachidonic Acid Bound To The Cyclooxyg Active Site Of Cox-2
authors J.R.Kiefer, J.L.Pawlitz, K.T.Moreland, R.A.Stegeman, J.K.Gierse, A.M.Stevens, D.C.Goodwin, S.W.Rowlinson, L.J.Marnett, W.C.Stall R.G.Kurumbail
compound source
Molecule: Prostaglandin H2 Synthase-2
Chain: A, B
Fragment: Prostaglandin H2 Synthase-2
Ec: 1.14.99.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_plasmid: Pvl1393

Molecule: Protein (9-Mer)
Chain: F
Engineered: Yes
Other_details: Synthetic

Synthetic: Yes
symmetry Space Group: I 2 2 2
R_factor 0.204 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.036 133.960 124.834 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACD, BOG, MAN, NAG enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
related structures by homologous chain: 1EQG, 1Q4G
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


  • Primary referenceStructural insights into the stereochemistry of the cyclooxygenase reaction., Kiefer JR, Pawlitz JL, Moreland KT, Stegeman RA, Hood WF, Gierse JK, Stevens AM, Goodwin DC, Rowlinson SW, Marnett LJ, Stallings WC, Kurumbail RG, Nature 2000 May 4;405(6782):97-101. PMID:10811226
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (1cvu.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 1CVU
  • CSU: Contacts of Structural Units for 1CVU
  • Likely Quarternary Molecular Structure file(s) for 1CVU
  • Structure Factors (463 Kb)
  • Retrieve 1CVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CVU from S2C, [Save to disk]
  • Re-refined 1cvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CVU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cvua2, region A:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1cvua1, region A:74-583 [Jmol] [rasmolscript] [script source]
        - Domain d1cvub2, region B:2033-2073 [Jmol] [rasmolscript] [script source]
        - Domain d1cvub1, region B:2074-2583 [Jmol] [rasmolscript] [script source]
  • Fold representative 1cvu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cvu_A] [1cvu] [1cvu_B] [1cvu_F]
  • SWISS-PROT database: [Q05769]
  • Domain organization of [PGH2_MOUSE] by SWISSPFAM
  • Domain found in 1CVU: [EGF ] by SMART
  • Other resources with information on 1CVU
  • Community annotation for 1CVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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