1CX0 Rna Binding Protein Rna date Aug 27, 1999
title Hepatitis Delta Virus Ribozyme
authors A.R.Ferre-D'Amare, K.Zhou, J.A.Doudna
compound source
Molecule: Hdv Ribozyme Self-Cleaved
Chain: B
Engineered: Yes
Organism_scientific: Hepatitis Delta Virus
Organism_taxid: 12475

Molecule: U1a Protein
Chain: A
Fragment: Rna Binding Domain
Engineered: Yes
Mutation: Yes

Organism_scientific: Hepatitis Delta Virus
Organism_taxid: 12475
symmetry Space Group: H 3 2
R_factor 0.246 R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
109.350 109.350 190.680 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MG, MSE enzyme
related structures by homologous chain: 1DRZ, 1SJ3
Primary referenceCrystal structure of a hepatitis delta virus ribozyme., Ferre-D'Amare AR, Zhou K, Doudna JA, Nature 1998 Oct 8;395(6702):567-74. PMID:9783582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1cx0.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1CX0
  • CSU: Contacts of Structural Units for 1CX0
  • Likely Quarternary Molecular Structure file(s) for 1CX0
  • Structure Factors (218 Kb)
  • Retrieve 1CX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CX0 from S2C, [Save to disk]
  • Re-refined 1cx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CX0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CX0, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cx0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cx0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cx0_A] [1cx0_B] [1cx0]
  • SWISS-PROT database: [P09012]
  • Domain organization of [SNRPA_HUMAN] by SWISSPFAM
  • Domain found in 1CX0: [RRM ] by SMART
  • Other resources with information on 1CX0
  • Community annotation for 1CX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CX0 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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