1CYD Oxidoreductase date Sep 01, 1995
title Carbonyl Reductase Complexed With Nadph And 2-Propanol
authors N.Tanaka, T.Nonaka, Y.Mitsui
compound source
Molecule: Carbonyl Reductase
Chain: A, B, C, D
Ec: 1.1.1.184
Other_details: This Protein Is Identical With An Adipocyte Protein
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Ddy Mice
Organ: Lung
Tissue: Epithelial
Cell: Epithelial Cell
Organelle: Mitochondrion
symmetry Space Group: P 1 21 1
R_factor 0.154 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.730 105.500 60.870 90.00 91.43 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand IPA, NDP enzyme Oxidoreductase E.C.1.1.1.184 BRENDA
related structures by homologous chain: 1PR9
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the ternary complex of mouse lung carbonyl reductase at 1.8 A resolution: the structural origin of coenzyme specificity in the short-chain dehydrogenase/reductase family., Tanaka N, Nonaka T, Nakanishi M, Deyashiki Y, Hara A, Mitsui Y, Structure. 1996 Jan 15;4(1):33-45. PMID:8805511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (1cyd.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 1CYD
  • CSU: Contacts of Structural Units for 1CYD
  • Likely Quarternary Molecular Structure file(s) for 1CYD
  • Retrieve 1CYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CYD from S2C, [Save to disk]
  • View 1CYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CYD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CYD, from MSDmotif at EBI
  • Genome occurence of 1CYD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cyda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1cydb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1cydc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1cydd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cyd_A] [1cyd_D] [1cyd_B] [1cyd] [1cyd_C]
  • SWISS-PROT database: [P08074]
  • Domain organization of [CBR2_MOUSE] by SWISSPFAM
  • Other resources with information on 1CYD
  • Community annotation for 1CYD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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