1CZD Gene Regulation date Sep 02, 1999
title Crystal Structure Of The Processivity Clamp Gp45 From Bacter
authors I.Moarefi, D.Jeruzalmi, J.Turner, M.O'Donnell, J.Kuriyan
compound source
Molecule: Dna Polymerase Accessory Protein G45
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.177 93.938 141.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
related structures by homologous chain: 1B77, 1B8H
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of the DNA polymerase processivity factor of T4 bacteriophage., Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J, J Mol Biol 2000 Mar 10;296(5):1215-23. PMID:10698628
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1czd.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 1CZD
  • Likely Quarternary Molecular Structure file(s) for 1CZD
  • Structure Factors (283 Kb)
  • Retrieve 1CZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CZD from S2C, [Save to disk]
  • Re-refined 1czd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CZD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CZD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1czda1, region A:1001-1110 [Jmol] [rasmolscript] [script source]
        - Domain d1czda2, region A:1111-1228 [Jmol] [rasmolscript] [script source]
        - Domain d1czdb1, region B:2001-2110 [Jmol] [rasmolscript] [script source]
        - Domain d1czdb2, region B:2111-2228 [Jmol] [rasmolscript] [script source]
        - Domain d1czdc1, region C:3001-3110 [Jmol] [rasmolscript] [script source]
        - Domain d1czdc2, region C:3111-3228 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1czd_B] [1czd_A] [1czd_C] [1czd]
  • SWISS-PROT database: [P04525]
  • Domain organization of [DPA5_BPT4] by SWISSPFAM
    • Other resources with information on 1CZD
  • Community annotation for 1CZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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