1CZS Blood Clotting date Sep 07, 1999
title Crystal Structure Of The C2 Domain Of Human Coagulation Factor V: Complex With Phenylmercury
authors S.Macedo-Ribeiro, W.Bode, R.Huber, W.H.Kane, P.Fuentes-Prior
compound source
Molecule: Protein (Coagulation Factor V)
Chain: A
Fragment: C2 Discoidin-Like Domain
Synonym: Activated Protein C Cofactor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Expression_system_common: Baculovirus-Driven Insect Cell System
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
46.430 51.830 68.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PHG enzyme
related structures by homologous chain: 1CZT, 1CZV
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceCrystal structures of the membrane-binding C2 domain of human coagulation factor V., Macedo-Ribeiro S, Bode W, Huber R, Quinn-Allen MA, Kim SW, Ortel TL, Bourenkov GP, Bartunik HD, Stubbs MT, Kane WH, Fuentes-Prior P, Nature 1999 Nov 25;402(6760):434-9. PMID:10586886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1czs.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1CZS
  • CSU: Contacts of Structural Units for 1CZS
  • Likely Quarternary Molecular Structure file(s) for 1CZS
  • Retrieve 1CZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CZS from S2C, [Save to disk]
  • View 1CZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CZS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CZS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1czsa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1czs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1czs] [1czs_A]
  • SWISS-PROT database: [P12259]
  • Domain organization of [FA5_HUMAN] by SWISSPFAM
  • Domain found in 1CZS: [FA58C ] by SMART
  • Other resources with information on 1CZS
  • Community annotation for 1CZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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