1CZZ Apoptosis date Sep 07, 1999
title Structure Of Tnf Receptor Associated Factor 2 In Complex With A 17-Residue Cd40 Peptide
authors H.Ye, Y.C.Park, M.Kreishman, E.Kieff, H.Wu
compound source
Molecule: Tumor Necrosis Factor Receptor Associated Protein 2;
Chain: A, B, C
Fragment: Traf Domain
Synonym: Traf2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d

Molecule: Cd 40 Peptide
Chain: D, E
Fragment: Traf2-Binding Region
Synonym: Cd40
Engineered: Yes

Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Sequence Of This Peptide Naturally Occurs In Humans (Homo Sapiens).
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.400 81.100 77.200 90.00 96.80 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACE enzyme
related structures by homologous chain: 1D0J
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe structural basis for the recognition of diverse receptor sequences by TRAF2., Ye H, Park YC, Kreishman M, Kieff E, Wu H, Mol Cell 1999 Sep;4(3):321-30. PMID:10518213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1czz.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1CZZ
  • CSU: Contacts of Structural Units for 1CZZ
  • Likely Quarternary Molecular Structure file(s) for 1CZZ
  • Retrieve 1CZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CZZ from S2C, [Save to disk]
  • View 1CZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CZZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CZZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1czza2, region A:315-349 [Jmol] [rasmolscript] [script source]
        - Domain d1czza1, region A:350-501 [Jmol] [rasmolscript] [script source]
        - Domain d1czzb2, region B:315-349 [Jmol] [rasmolscript] [script source]
        - Domain d1czzb1, region B:350-501 [Jmol] [rasmolscript] [script source]
        - Domain d1czzc2, region C:315-349 [Jmol] [rasmolscript] [script source]
        - Domain d1czzc1, region C:350-501 [Jmol] [rasmolscript] [script source]
  • Fold representative 1czz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1czz_D] [1czz_B] [1czz_A] [1czz_C] [1czz] [1czz_E]
  • SWISS-PROT database: [P25942] [Q12933]
  • Domain organization of [TNR5_HUMAN] [TRAF2_HUMAN] by SWISSPFAM
  • Domain found in 1CZZ: [MATH ] by SMART
  • Other resources with information on 1CZZ
  • Community annotation for 1CZZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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