1D0A	Apoptosis	date	Sep 09, 1999
title	Structure Of Tnf Receptor Associated Factor 2 (Traf2) In Com A Human Ox40 Peptide
authors	H.Ye, Y.C.Park, M.Kreishman, E.Kieff, H.Wu
compound		source
Molecule: Tumor Necrosis Factor Receptor Associated Protein Chain: A, B, C, D, E, F Fragment: Traf Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24d
Molecule: Ox40l Receptor Peptide Chain: G, H, I, J, K, L Fragment: Traf-Binding Sequence Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Naturally Occurs In Humans (Homo Sapiens)
symmetry	Space Group: C 1 2 1	R_factor 0.225 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.400 85.600 125.400 90.00 118.90 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ACE	enzyme
related structures	by homologous chain: 1D01, 1F3V
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	The structural basis for the recognition of diverse receptor sequences by TRAF2., Ye H, Park YC, Kreishman M, Kieff E, Wu H, Mol Cell 1999 Sep;4(3):321-30. PMID:10518213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (1d0a.pdb1.gz) 89 Kb Biological Unit Coordinates (1d0a.pdb2.gz) 89 Kb Biological Unit Coordinates (1d0a.pdb3.gz) 174 Kb Biological Unit Coordinates (1d0a.pdb4.gz) 175 Kb LPC: Ligand-Protein Contacts for 1D0A CSU: Contacts of Structural Units for 1D0A Likely Quarternary Molecular Structure file(s) for 1D0A Retrieve 1D0A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D0A from S2C, [Save to disk]

View 1D0A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D0A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D0A, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d0aa2, region A:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0aa1, region A:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0ab2, region B:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0ab1, region B:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0ac2, region C:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0ac1, region C:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0ad2, region D:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0ad1, region D:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0ae2, region E:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0ae1, region E:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0af2, region F:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0af1, region F:350-501 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d0a] [1d0a_B] [1d0a_J] [1d0a_A] [1d0a_K] [1d0a_L] [1d0a_D] [1d0a_F] [1d0a_C] [1d0a_G] [1d0a_E] [1d0a_H] [1d0a_I] SWISS-PROT database: [P43489] [Q12933] Domain organization of [TNR4_HUMAN] [TRAF2_HUMAN] by SWISSPFAM Domain found in 1D0A: [MATH ] by SMART

Other resources with information on 1D0A

Community annotation for 1D0A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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