1D0E Transferase Dna date Sep 09, 1999
title Crystal Structures Of The N-Terminal Fragment From Moloney M Leukemia Virus Reverse Transcriptase Complexed With Nucleic Functional Implications For Template-Primer Binding To The Domain
authors S.Najmudin, M.L.Cote, D.Sun, S.Yohannan, S.P.Montano, J.Gu, M.M.Ge
compound source
Molecule: 5'-D(Tptptpcpaptpgpcpaptpg)-3'
Chain: E, F
Engineered: Yes
Synthetic: Yes

Molecule: Reverse Transcriptase
Chain: A, B
Fragment: N-Terminal Fragment Comprising Fingers And Palm D
Synonym: Rt
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Moloney Murine Leukemia Virus
Organism_taxid: 11801
Gene: Mmlv-Rt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prt 107-3
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.160 63.540 73.500 90.00 103.85 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1QAI, 1RW3
Primary referenceCrystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain., Najmudin S, Cote ML, Sun D, Yohannan S, Montano SP, Gu J, Georgiadis MM, J Mol Biol 2000 Feb 18;296(2):613-32. PMID:10669612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1d0e.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 1D0E
  • Likely Quarternary Molecular Structure file(s) for 1D0E
  • Structure Factors (97 Kb)
  • Retrieve 1D0E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D0E from S2C, [Save to disk]
  • Re-refined 1d0e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D0E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D0E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D0E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d0ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d0eb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d0e] [1d0e_A] [1d0e_F] [1d0e_B] [1d0e_E]
  • SWISS-PROT database: [P03355]
  • Domain organization of [POL_MLVMO] by SWISSPFAM
  • Other resources with information on 1D0E
  • Community annotation for 1D0E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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