1D2L Signaling Protein date Sep 24, 1999
title Nmr Solution Structure Of Complement-Like Repeat Cr3 From The Low Density Lipoprotein Receptor-Related Protein (Lrp) . Evidence For Specific Binding To The Receptor Binding Domain Of Human Alpha-2 Macroglobulin
authors K.Dolmer, W.Huang, P.G.W.Gettins
compound source
Molecule: Lipoprotein Receptor Related Protein
Chain: A
Fragment: Complement-Like Repeat 3 (Cr3)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
ligand CA enzyme
Primary referenceNMR solution structure of complement-like repeat CR3 from the low density lipoprotein receptor-related protein. Evidence for specific binding to the receptor binding domain of human alpha(2)-macroglobulin., Dolmer K, Huang W, Gettins PG, J Biol Chem 2000 Feb 4;275(5):3264-9. PMID:10652313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1D2L
  • CSU: Contacts of Structural Units for 1D2L
  • Original NMR restraints for 1D2L from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D2L from S2C, [Save to disk]
  • View 1D2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D2L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D2L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d2la_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1d2l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d2l] [1d2l_A]
  • SWISS-PROT database: [Q07954]
  • Domain organization of [LRP1_HUMAN] by SWISSPFAM
  • Domain found in 1D2L: [LDLa ] by SMART
  • Other resources with information on 1D2L
  • Community annotation for 1D2L at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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