1D3L Cell Adhesion date Sep 29, 1999
title D1d2-Icam-1 Fully Glycosylated, Variation Of D1-D2 Interdomain Angle In Different Crystal Structures.
authors J.Bella, P.R.Kolatkar, M.G.Rossmann
compound source
Molecule: Protein (Intercellular Adhesion Molecule-1)
Chain: A
Fragment: First Two Domains, Residues 1-185
Synonym: Icam-1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.371 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.070 54.070 145.770 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor., Kolatkar PR, Bella J, Olson NH, Bator CM, Baker TS, Rossmann MG, EMBO J 1999 Nov 15;18(22):6249-59. PMID:10562537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (1d3l.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1D3L
  • Likely Quarternary Molecular Structure file(s) for 1D3L
  • Retrieve 1D3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D3L from S2C, [Save to disk]
  • View 1D3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D3L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D3L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d3la2, region A:1-82 [Jmol] [rasmolscript] [script source]
        - Domain d1d3la1, region A:83-185 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d3l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d3l] [1d3l_A]
  • SWISS-PROT database: [P05362]
  • Domain organization of [ICAM1_HUMAN] by SWISSPFAM
  • Other resources with information on 1D3L
  • Community annotation for 1D3L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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