1D41 Dna date May 07, 1991
title Stabilization Of Z-Dna By Demethylation Of Thymine Bases: 1.3 Angstroms Single-Crystal Structure Of D(M5cguam5cg)
authors G.Zhou, P.S.Ho
compound source
Molecule: Dna (5'-D((5cm)Pgpupap(5cm)Pg)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
length a length b length c angle alpha angle beta angle gamma
17.820 30.440 44.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 5CM, MG enzyme
Primary referenceStabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG)., Zhou GW, Ho PS, Biochemistry 1990 Aug 7;29(31):7229-36. PMID:2207101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1d41.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1D41
  • CSU: Contacts of Structural Units for 1D41
  • Likely Quarternary Molecular Structure file(s) for 1D41
  • Structure Factors (30 Kb)
  • Retrieve 1D41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D41 from S2C, [Save to disk]
  • Re-refined 1d41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D41
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D41, from MSDmotif at EBI
  • Fold representative 1d41 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d41] [1d41_A] [1d41_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1D41
  • Community annotation for 1D41 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science