1D4B Apoptosis date Oct 02, 1999
title Cide-N Domain Of Human Cide-B
authors A.Lugovskoy, P.Zhou, J.Chou, J.Mccarty, P.Li, G.Wagner
compound source
Molecule: Human Cell Death-Inducing Effector B
Chain: A
Fragment: N-Terminal Domain
Synonym: Cide B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the CIDE-N domain of CIDE-B and a model for CIDE-N/CIDE-N interactions in the DNA fragmentation pathway of apoptosis., Lugovskoy AA, Zhou P, Chou JJ, McCarty JS, Li P, Wagner G, Cell 1999 Dec 23;99(7):747-55. PMID:10619428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk]
  • Biological Unit Coordinates (1d4b.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1D4B
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D4B from S2C, [Save to disk]
    • View 1D4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D4B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D4B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d4ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d4b] [1d4b_A]
  • SWISS-PROT database: [Q9UHD4]
  • Domain organization of [CIDEB_HUMAN] by SWISSPFAM
  • Domain found in 1D4B: [CAD ] by SMART
    • Other resources with information on 1D4B
  • Community annotation for 1D4B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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