1D4U Dna Binding Protein date Oct 06, 1999
title Interactions Of Human Nucleotide Excision Repair Protein Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n Nmr Relaxation Studies
authors G.W.Buchko, G.W.Daughdrill, R.De Lorimier, S.Rao, N.G.Isern, J.Lingbeck, J.Taylor, M.S.Wold, M.Gochin, L.D.Spicer, D.F.Lowry, M.A.Kennedy
compound source
Molecule: Nucleotide Excision Repair Protein Xpa (Xpa-Mbd)
Chain: A
Fragment: Xpa-Mbd
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11d
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1XPA

Primary referenceInteractions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies., Buchko GW, Daughdrill GW, de Lorimier R, Rao B K, Isern NG, Lingbeck JM, Taylor JS, Wold MS, Gochin M, Spicer LD, Lowry DF, Kennedy MA, Biochemistry 1999 Nov 16;38(46):15116-28. PMID:10563794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1D4U
  • CSU: Contacts of Structural Units for 1D4U
  • Retrieve 1D4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D4U from S2C, [Save to disk]
  • View 1D4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D4U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D4U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d4ua2, region A:1-36 [Jmol] [rasmolscript] [script source]
        - Domain d1d4ua1, region A:37-111 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d4u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d4u_A] [1d4u]
  • SWISS-PROT database: [P23025]
  • Domain organization of [XPA_HUMAN] by SWISSPFAM
  • Other resources with information on 1D4U
  • Community annotation for 1D4U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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