1D5S Hydrolase Inhibitor date Oct 11, 1999
title Crystal Structure Of Cleaved Antitrypsin Polymer
authors M.A.Dunstone, W.Dai, J.C.Whisstock, J.Rossjohn, R.N.Pike, S.C.Feil, B.F.Le Bonneic, M.W.Parker, S.P.Bottomley
compound source
Molecule: P1-Arg Antitrypsin
Chain: A
Fragment: N-Terminal Fragment
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: P1-Arg Antitrypsin
Chain: B
Fragment: C-Terminal Fragment
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.208 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.170 110.170 76.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 7API, 9API
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCleaved antitrypsin polymers at atomic resolution., Dunstone MA, Dai W, Whisstock JC, Rossjohn J, Pike RN, Feil SC, Le Bonniec BF, Parker MW, Bottomley SP, Protein Sci 2000 Feb;9(2):417-20. PMID:10716194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5s.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 1D5S
  • Likely Quarternary Molecular Structure file(s) for 1D5S
  • Retrieve 1D5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5S from S2C, [Save to disk]
  • View 1D5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D5S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D5S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5s.1, region A:,B [Jmol] [rasmolscript] [script source]
  • Fold representative 1d5s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5s_B] [1d5s] [1d5s_A]
  • SWISS-PROT database: [P01009]
  • Domain organization of [A1AT_HUMAN] by SWISSPFAM
  • Domain found in 1D5S: [SERPIN ] by SMART
  • Other resources with information on 1D5S
  • Community annotation for 1D5S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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