1D5T Hydrolase Inhibitor date Oct 11, 1999
title Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
authors L.Peng, K.Zeng, A.Heine, B.Moyer, S.E.Greasley, P.Kuhn, W.E.Balch, I.A.Wilson
compound source
Molecule: Guanine Nucleotide Dissociation Inhibitor
Chain: A
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.290 42.740 61.780 90.00 104.55 90.00
method X-Ray Diffractionresolution 1.04 Å
ligand SO4 enzyme
related structures by homologous chain: 1GND
Gene
Ontology
ChainFunctionProcessComponent
A
  • GDP-dissociation inhibitor a...
  • Rab GDP-dissociation inhibit...
  • GTPase activator activity


    • Primary referenceA new functional domain of guanine nucleotide dissociation inhibitor (alpha-GDI) involved in Rab recycling., Luan P, Heine A, Zeng K, Moyer B, Greasely SE, Kuhn P, Balch WE, Wilson IA, Traffic 2000 Mar;1(3):270-81. PMID:11208110
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5t.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1D5T
  • CSU: Contacts of Structural Units for 1D5T
  • Likely Quarternary Molecular Structure file(s) for 1D5T
  • Structure Factors (1714 Kb)
  • Retrieve 1D5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5T from S2C, [Save to disk]
  • Re-refined 1d5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D5T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1D5T from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D5T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5ta1, region A:-2-291,A:389-431 [Jmol] [rasmolscript] [script source]
        - Domain d1d5ta2, region A:292-388 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5t] [1d5t_A]
  • SWISS-PROT database: [P21856]
  • Domain organization of [GDIA_BOVIN] by SWISSPFAM
    • Other resources with information on 1D5T
  • Community annotation for 1D5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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