1D7G Transcription Factor Dna date Oct 18, 1999
title A Model For The Complex Between The Hypoxia-Inducible Factor-1 (Hif-1) And Its Consensus Dna Sequence
authors G.Michel, E.Minet, F.Durant, J.Remacle, C.Michiels
compound source
Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator
Chain: C
Fragment: Dna Binding Domain
Synonym: Arnt
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Hypoxia-Inducible Factor 1 Alpha
Chain: D
Fragment: Dna Binding Domain
Synonym: Hif-1

Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Dna
Chain: A
Fragment: Hypoxia Responsive Element (Hre)
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Was Chemically Synthesized

Molecule: Dna
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Was Chemically Synthesized
methodTheoretical Model
Primary referenceA model for the complex between the hypoxia-inducible factor-1 (HIF-1) and its consensus DNA sequence., Michel G, Minet E, Ernest I, Roland I, Durant F, Remacle J, Michiels C, J Biomol Struct Dyn 2000 Oct;18(2):169-79. PMID:11089639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1D7G
  • SEQRES to COORDINATES correlation for 1D7G from S2C, [Save to disk]
  • View 1D7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D7G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1d7g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P27540] [Q16665]
  • Domain organization of [ARNT_HUMAN] [HIF1A_HUMAN] by SWISSPFAM
  • Other resources with information on 1D7G
  • Community annotation for 1D7G at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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