1D7V	Lyase	date	Oct 19, 1999
title	Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decar With Nma
authors	V.N.Malashkevich, M.D.Toney, P.Strop, J.Keller, J.N.Jansonius
compound		source
Molecule: Protein (2,2-Dialkylglycine Decarboxylase (Pyruva Chain: A Synonym: Dgd Ec: 4.1.1.64 Engineered: Yes		Organism_scientific: Burkholderia Cepacia Organism_taxid: 292 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ty103 Expression_system_plasmid: Pkdhe19
symmetry	Space Group: P 64 2 2	R_factor 0.185 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 153.200 153.200 86.900 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	K, NA, NMA	enzyme	Lyase E.C.4.1.1.64 BRENDA
related structures	by homologous chain: 1DGD, 1DGE
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of dialkylglycine decarboxylase inhibitor complexes., Malashkevich VN, Strop P, Keller JW, Jansonius JN, Toney MD, J Mol Biol 1999 Nov 19;294(1):193-200. PMID:10556038

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (1d7v.pdb1.gz) 261 Kb LPC: Ligand-Protein Contacts for 1D7V CSU: Contacts of Structural Units for 1D7V Likely Quarternary Molecular Structure file(s) for 1D7V Retrieve 1D7V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D7V from S2C, [Save to disk]

View 1D7V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D7V

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D7V, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d7va_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d7v_A] [1d7v] SWISS-PROT database: [P16932] Domain organization of [DGDA_BURCE] by SWISSPFAM

Other resources with information on 1D7V

Community annotation for 1D7V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---