1D8B Dna Binding Protein date Oct 21, 1999
title Nmr Structure Of The Hrdc Domain From Saccharomyces Cerevisi Helicase
authors Z.Liu, M.J.Macias, M.J.Bottomley, G.Stier, J.P.Linge, M.Nilges, P. M.Sattler
compound source
Molecule: Sgs1 Recq Helicase
Chain: A
Fragment: Hrdc Domain
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Modified Pet9d
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe three-dimensional structure of the HRDC domain and implications for the Werner and Bloom syndrome proteins., Liu Z, Macias MJ, Bottomley MJ, Stier G, Linge JP, Nilges M, Bork P, Sattler M, Structure Fold Des 1999 Dec 15;7(12):1557-66. PMID:10647186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (1d8b.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1D8B
  • Original NMR restraints for 1D8B from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1D8B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D8B from S2C, [Save to disk]
    • View 1D8B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D8B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D8B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d8ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d8b] [1d8b_A]
  • SWISS-PROT database: [P35187]
  • Domain organization of [SGS1_YEAST] by SWISSPFAM
  • Domain found in 1D8B: [HRDC ] by SMART
    • Other resources with information on 1D8B
  • Community annotation for 1D8B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science