1D90 Dna date Oct 17, 1992
title Refined Crystal Structure Of An Octanucleotide Duplex With I.T Mismatched Base Pairs
authors W.B.T.Cruse, J.Aymani, O.Kennard, T.Brown, A.G.C.Jack, G.A.Leonard
compound source
Molecule: Dna (5'-D(Gpgpipgpcptpcpc)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 61
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.070 45.070 45.490 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
Primary referenceRefined crystal structure of an octanucleotide duplex with I.T. mismatched base pairs., Cruse WB, Aymani J, Kennard O, Brown T, Jack AG, Leonard GA, Nucleic Acids Res 1989 Jan 11;17(1):55-72. PMID:2911488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1d90.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1D90
  • Likely Quarternary Molecular Structure file(s) for 1D90
  • Retrieve 1D90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D90 from S2C, [Save to disk]
  • View 1D90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D90
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D90, from MSDmotif at EBI
  • Fold representative 1d90 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d90] [1d90_A] [1d90_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1D90
  • Community annotation for 1D90 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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