1D9Z Gene Regulation date Oct 30, 1999
title Crystal Structure Of The Dna Repair Protein Uvrb In Complex
authors K.Theis, P.J.Chen, M.Skorvaga, B.Van Houten, C.Kisker
compound source
Molecule: Excinuclease Uvrabc Component Uvrb
Chain: A
Engineered: Yes
Organism_scientific: Bacillus Caldotenax
Organism_taxid: 1395
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb1
symmetry Space Group: P 31 2 1
R_factor 0.262 R_Free 0.335
length a length b length c angle alpha angle beta angle gamma
153.443 153.443 80.741 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand ATP, MG, ZN enzyme
  • nuclease activity

  • Primary referenceCrystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair., Theis K, Chen PJ, Skorvaga M, Van Houten B, Kisker C, EMBO J 1999 Dec 15;18(24):6899-907. PMID:10601012
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1d9z.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1D9Z
  • CSU: Contacts of Structural Units for 1D9Z
  • Likely Quarternary Molecular Structure file(s) for 1D9Z
  • Retrieve 1D9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D9Z from S2C, [Save to disk]
  • View 1D9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D9Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D9Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d9za1, region A:2-414 [Jmol] [rasmolscript] [script source]
        - Domain d1d9za2, region A:415-595 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d9z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d9z_A] [1d9z]
  • SWISS-PROT database: [P56981]
  • Domain organization of [UVRB_BACCA] by SWISSPFAM
  • Domains found in 1D9Z: [DEXDc] [HELICc ] by SMART
  • Other resources with information on 1D9Z
  • Community annotation for 1D9Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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