1DCK Transcription date Nov 05, 1999
title Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
authors P.Gouet, B.Fabry, V.Guillet, C.Birck, L.Mourey, D.Kahn, J.P.Samama
compound source
Molecule: Transcriptional Regulatory Protein Fixj
Chain: A, B
Fragment: N-Terminal Domain (Residues 1-126)
Engineered: Yes
Mutation: Yes
Organism_scientific: Sinorhizobium Meliloti
Organism_taxid: 382
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 1
R_factor 0.206 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.700 42.500 44.700 93.20 103.00 101.80
method X-Ray Diffractionresolution 2.00 Å
ligand 15P, MN enzyme
related structures by homologous chain: 1D5W, 1DBW
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural transitions in the FixJ receiver domain., Gouet P, Fabry B, Guillet V, Birck C, Mourey L, Kahn D, Samama JP, Structure Fold Des 1999 Dec 15;7(12):1517-26. PMID:10647182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1dck.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (1dck.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1DCK
  • CSU: Contacts of Structural Units for 1DCK
  • Likely Quarternary Molecular Structure file(s) for 1DCK
  • Structure Factors (106 Kb)
  • Retrieve 1DCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DCK from S2C, [Save to disk]
  • Re-refined 1dck structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DCK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DCK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dcka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dckb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dck] [1dck_A] [1dck_B]
  • SWISS-PROT database: [P10958]
  • Domain organization of [FIXJ_RHIME] by SWISSPFAM
  • Domain found in 1DCK: [REC ] by SMART
  • Other resources with information on 1DCK
  • Community annotation for 1DCK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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