1DDF Death Domain date Nov 08, 1996
title Fas Death Domain, Nmr, Minimized Average Structure
authors B.Huang, M.Eberstadt, E.Olejniczak, R.P.Meadows, S.Fesik
compound source
Molecule: Fas
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Fetal Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hms174 (De3)
Expression_system_vector: Pet30b
Other_details: Methionine Residue Added To N-Terminus, An Lehhhhhh Histidine Tag Was Added At The C-Terminus For Ease Of Purification
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and mutagenesis of the Fas (APO-1/CD95) death domain., Huang B, Eberstadt M, Olejniczak ET, Meadows RP, Fesik SW, Nature 1996 Dec 19-26;384(6610):638-41. PMID:8967952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1DDF
  • Retrieve 1DDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DDF from S2C, [Save to disk]
  • View 1DDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DDF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DDF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ddf__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ddf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ddf_A] [1ddf]
  • SWISS-PROT database: [P25445]
  • Domain organization of [TNR6_HUMAN] by SWISSPFAM
  • Domain found in 1DDF: [DEATH ] by SMART
  • Other resources with information on 1DDF
  • Community annotation for 1DDF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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