OCA Atlas for 1DDO

1DDO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DTR, FAD, ITR

enzyme

Gene
Ontology

Chain	Function	Process	Component
H, E, C, B, G, F, A, D

Primary reference

Active site plasticity in D-amino acid oxidase: a crystallographic analysis., Todone F, Vanoni MA, Mozzarelli A, Bolognesi M, Coda A, Curti B, Mattevi A, Biochemistry 1997 May 13;36(19):5853-60. PMID:9153426

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]

Biological Unit Coordinates (1ddo.pdb1.gz) 117 Kb

Biological Unit Coordinates (1ddo.pdb2.gz) 117 Kb

Biological Unit Coordinates (1ddo.pdb3.gz) 116 Kb

Biological Unit Coordinates (1ddo.pdb4.gz) 116 Kb

Biological Unit Coordinates (1ddo.pdb5.gz) 225 Kb

Biological Unit Coordinates (1ddo.pdb6.gz) 227 Kb

LPC: Ligand-Protein Contacts for 1DDO

CSU: Contacts of Structural Units for 1DDO

Likely Quarternary Molecular Structure file(s) for 1DDO

Structure Factors (629 Kb)

Retrieve 1DDO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1DDO from S2C, [Save to disk]

Re-refined 1ddo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DDO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ddo] [1ddo_A] [1ddo_C] [1ddo_B] [1ddo_D] [1ddo_E] [1ddo_F] [1ddo_G] [1ddo_H]

SWISS-PROT database: [P00371]

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]