1DEB Structural Protein date Nov 14, 1999
title Crystal Structure Of The N-Terminal Coiled Coil Domain From Apc
authors C.L.Day, T.Alber
compound source
Molecule: Adenomatous Polyposis Coli Protein
Chain: A, B
Fragment: N-Terminal Coiled Coil Domain
Synonym: Apc Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paed4
symmetry Space Group: P 65 2 2
R_factor 0.234 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.860 66.860 127.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand SO4 enzyme
note 1DEB is a representative structure
Primary referenceCrystal structure of the amino-terminal coiled-coil domain of the APC tumor suppressor., Day CL, Alber T, J Mol Biol 2000 Aug 4;301(1):147-56. PMID:10926498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1deb.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (1deb.pdb2.gz) 9 Kb
  • Biological Unit Coordinates (1deb.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (1deb.pdb4.gz) 18 Kb
  • Biological Unit Coordinates (1deb.pdb5.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1DEB
  • CSU: Contacts of Structural Units for 1DEB
  • Likely Quarternary Molecular Structure file(s) for 1DEB
  • Structure Factors (44 Kb)
  • Retrieve 1DEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DEB from S2C, [Save to disk]
  • Re-refined 1deb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DEB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DEB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1deba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1debb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1deb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1deb_A] [1deb_B] [1deb]
  • SWISS-PROT database: [P25054]
  • Domain organization of [APC_HUMAN] by SWISSPFAM
  • Other resources with information on 1DEB
  • Community annotation for 1DEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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