1DFF	Hydrolase	date	Aug 19, 1997
title	Peptide Deformylase
authors	M.K.Chan, W.Gong, P.T.R.Rajagopalan, B.Hao, C.M.Tsai, D.Pei
compound		source
Molecule: Peptide Deformylase Chain: A Ec: 3.5.1.31 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet-22b Other_details: The Details Of The Expression May Be Found I Biochemistry 36, 13910 (1997)
symmetry	Space Group: P 61 2 2	R_factor 0.184 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.350 55.350 230.920 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.88 Å
ligand	ZN	enzyme	Hydrolase E.C.3.5.1.31 BRENDA
related structures	by homologous chain: 1BS5, 1BSK
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the Escherichia coli peptide deformylase., Chan MK, Gong W, Rajagopalan PT, Hao B, Tsai CM, Pei D, Biochemistry 1997 Nov 11;36(45):13904-9. PMID:9374869

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (1dff.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 1DFF CSU: Contacts of Structural Units for 1DFF Likely Quarternary Molecular Structure file(s) for 1DFF Retrieve 1DFF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DFF from S2C, [Save to disk]

View 1DFF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DFF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DFF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dff__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dff] [1dff_A] SWISS-PROT database: [P0A6K3] Domain organization of [DEF_ECOLI] by SWISSPFAM

Other resources with information on 1DFF

Community annotation for 1DFF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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