1DG8 Oxidoreductase date Nov 23, 1999
title Dihydrofolate Reductase Of Mycobacterium Tuberculosis Comple Nadph
authors R.Li, R.Sirawaraporn, P.Chitnumsub, W.Sirawaraporn, J.Wooden, F.Athappilly, S.Turley, W.G.Hol
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Synonym: Dhfr
Ec: 1.5.1.3
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
symmetry Space Group: P 41
R_factor 0.183 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.380 60.380 58.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, NDP enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
related structures by homologous chain: 1DG5, 1DG7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of M. tuberculosis dihydrofolate reductase reveals opportunities for the design of novel tuberculosis drugs., Li R, Sirawaraporn R, Chitnumsub P, Sirawaraporn W, Wooden J, Athappilly F, Turley S, Hol WG, J Mol Biol 2000 Jan 14;295(2):307-23. PMID:10623528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1dg8.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1DG8
  • CSU: Contacts of Structural Units for 1DG8
  • Likely Quarternary Molecular Structure file(s) for 1DG8
  • Retrieve 1DG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DG8 from S2C, [Save to disk]
  • View 1DG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DG8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DG8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dg8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dg8_A] [1dg8]
  • SWISS-PROT database: [P0A546]
  • Domain organization of [DYR_MYCTU] by SWISSPFAM
  • Other resources with information on 1DG8
  • Community annotation for 1DG8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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