1DGM CRYSTAL STRUCTURE OF ADENOSINE KINASE FROM TOXOPLASMA GONDII date
authors Cook, W.J., DeLucas, L.J., Chattopadhyay, D.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand ACY, ADN, CL, MG enzyme
related structures by homologous chain: 1LII, 1LIJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of adenosine kinase from Toxoplasma gondii at 1.8 A resolution., Cook WJ, DeLucas LJ, Chattopadhyay D, Protein Sci 2000 Apr;9(4):704-12. PMID:10794412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1dgm.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1DGM
  • CSU: Contacts of Structural Units for 1DGM
  • Likely Quarternary Molecular Structure file(s) for 1DGM
  • Structure Factors (231 Kb)
  • Retrieve 1DGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGM from S2C, [Save to disk]
  • Re-refined 1dgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DGM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DGM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dgma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgm_A] [1dgm]
  • SWISS-PROT database: [Q9TVW2]
  • Domain organization of [ADK_TOXGO] by SWISSPFAM
  • Other resources with information on 1DGM
  • Community annotation for 1DGM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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