1DGV Blood Clotting date Nov 25, 1999
title Homology-Based Model Of Apo Cib (Calcium-And Integrin- Binding Protein)
authors P.M.Hwang, H.J.Vogel
compound source
Molecule: Apo Cib
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
related structures by homologous chain: 1DGU, 1Y1A
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium-dependent protein ki...
  • protein serine/threonine kin...


  • Primary referenceStructures of the platelet calcium- and integrin-binding protein and the alphaIIb-integrin cytoplasmic domain suggest a mechanism for calcium-regulated recognition; homology modelling and NMR studies., Hwang PM, Vogel HJ, J Mol Recognit 2000 Mar-Apr;13(2):83-92. PMID:10822252
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1DGV
  • Retrieve 1DGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGV from S2C, [Save to disk]
  • View 1DGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DGV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DGV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dgva_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dgv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgv_A] [1dgv]
  • SWISS-PROT database: [Q99828]
  • Domain organization of [CIB1_HUMAN] by SWISSPFAM
  • Domain found in 1DGV: [EFh ] by SMART
  • Other resources with information on 1DGV
  • Community annotation for 1DGV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DGV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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