1DHM	Dna Binding Protein	date	Aug 15, 1995
title	Dna-Binding Domain Of E2 From Human Papillomavirus-31, Nmr, Average Structure
authors	H.Liang, A.P.Petros, R.P.Meadows, H.S.Yoon, D.A.Egan, K.Walter, T.F.Holzman, T.Robins, S.W.Fesik
compound		source
Molecule: E2 Protein Chain: A, B Fragment: Dna-Binding Domain Engineered: Yes Other_details: From Human Papillomavirus-31		Organism_scientific: Human Papillomavirus Type Organism_taxid: 10585 Strain: 31 Gene: E2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet3b Other_details: T7 Rna Polymerase Driven
method	Solution NMR
related structures	by homologous chain: 1R8P
Gene Ontology	Chain Function Process Component A, B
Primary reference	Solution structure of the DNA-binding domain of a human papillomavirus E2 protein: evidence for flexible DNA-binding regions., Liang H, Petros AM, Meadows RP, Yoon HS, Egan DA, Walter K, Holzman TF, Robins T, Fesik SW, Biochemistry 1996 Feb 20;35(7):2095-103. PMID:8652551

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1dhm.pdb1.gz) 45 Kb CSU: Contacts of Structural Units for 1DHM Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1DHM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DHM from S2C, [Save to disk]

View 1DHM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DHM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DHM, from MSDmotif at EBI Genome occurence of 1DHM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dhma_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dhmb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dhm_B] [1dhm_A] [1dhm] SWISS-PROT database: [P17383] Domain organization of [VE2_HPV31] by SWISSPFAM

Other resources with information on 1DHM

Community annotation for 1DHM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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