1DI9 Transferase date Nov 29, 1999
title The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline
authors L.Shewchuk, A.Hassell, L.F.Kuyper
compound source
Molecule: P38 Kinase
Chain: A
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Prseta
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.176 84.862 127.015 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSQ enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1KV2, 1W83
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding mode of the 4-anilinoquinazoline class of protein kinase inhibitor: X-ray crystallographic studies of 4-anilinoquinazolines bound to cyclin-dependent kinase 2 and p38 kinase., Shewchuk L, Hassell A, Wisely B, Rocque W, Holmes W, Veal J, Kuyper LF, J Med Chem 2000 Jan 13;43(1):133-8. PMID:10633045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1di9.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1DI9
  • CSU: Contacts of Structural Units for 1DI9
  • Likely Quarternary Molecular Structure file(s) for 1DI9
  • Structure Factors (145 Kb)
  • Retrieve 1DI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DI9 from S2C, [Save to disk]
  • Re-refined 1di9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DI9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DI9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1di9a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1di9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1di9] [1di9_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1DI9: [S_TKc ] by SMART
  • Other resources with information on 1DI9
  • Community annotation for 1DI9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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