1DJ6 Dna date Dec 01, 1999
title Complex Of A Z-Dna Hexamer, D(Cg)3, With Synthetic Polyamine Temperature
authors H.Ohishi, K.I.Tomita, I.Nakanishi, M.Ohtsuchi, T.Hakoshima, A.Ri
compound source
Molecule: 5'-D(Cpgpcpgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.930 31.360 44.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand 104, MG enzyme
Primary referenceThe crystal structure of N(1)-[2-(2-amino-ethylamino)-ethyl]-ethane-1,2-diamine (polyamines) binding to the minor groove of d(CGCGCG)(2), hexamer at room temperature., Ohishi H, Suzuki K, Ohtsuchi M, Hakoshima T, Rich A, FEBS Lett 2002 Jul 17;523(1-3):29-34. PMID:12123799
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1dj6.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1DJ6
  • CSU: Contacts of Structural Units for 1DJ6
  • Likely Quarternary Molecular Structure file(s) for 1DJ6
  • Structure Factors (150 Kb)
  • Retrieve 1DJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJ6 from S2C, [Save to disk]
  • Re-refined 1dj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DJ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DJ6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dj6_B] [1dj6_A] [1dj6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DJ6
  • Community annotation for 1DJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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