1DJM Signaling Protein date Dec 03, 1999
title Solution Structure Of Bef3-Activated Chey From Escherichia C
authors H.S.Cho, S.Y.Lee, D.Yan, X.Pan, J.S.Parkinson, S.Kustu, D.E.Wemmer J.G.Pelton
compound source
Molecule: Chemotaxis Protein Y
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet21
methodSolution NMR
related structures by homologous chain: 1A0O, 1CYE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of activated CheY., Cho HS, Lee SY, Yan D, Pan X, Parkinson JS, Kustu S, Wemmer DE, Pelton JG, J Mol Biol 2000 Mar 31;297(3):543-51. PMID:10731410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (901 Kb) [Save to disk]
  • Biological Unit Coordinates (1djm.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1DJM
  • Original NMR restraints for 1DJM from PDB
  • Retrieve 1DJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DJM from S2C, [Save to disk]
    • View 1DJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DJM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DJM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1djma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1djm] [1djm_A]
  • SWISS-PROT database: [P0AE67]
  • Domain organization of [CHEY_ECOLI] by SWISSPFAM
  • Domain found in 1DJM: [REC ] by SMART
    • Other resources with information on 1DJM
  • Community annotation for 1DJM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1DJM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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