1DLE Hydrolase date Dec 09, 1999
title Factor B Serine Protease Domain
authors H.Jing, Y.Xu, M.Carson, D.Moore, K.J.Macon, J.E.Volanakis, S.V.Nar
compound source
Molecule: Complement Factor B
Chain: A, B
Fragment: Serine Protease Domain
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.643 74.259 73.258 90.00 95.55 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1OP2, 1RTK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew structural motifs on the chymotrypsin fold and their potential roles in complement factor B., Jing H, Xu Y, Carson M, Moore D, Macon KJ, Volanakis JE, Narayana SV, EMBO J 2000 Jan 17;19(2):164-73. PMID:10637221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1dle.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 1DLE
  • Likely Quarternary Molecular Structure file(s) for 1DLE
  • Structure Factors (237 Kb)
  • Retrieve 1DLE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DLE from S2C, [Save to disk]
  • Re-refined 1dle structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DLE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DLE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DLE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dlea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dleb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dle_A] [1dle] [1dle_B]
  • SWISS-PROT database: [P00751]
  • Domain organization of [CFAB_HUMAN] by SWISSPFAM
  • Domain found in 1DLE: [Tryp_SPc ] by SMART
    • Other resources with information on 1DLE
  • Community annotation for 1DLE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science