1DMR OXIDIZED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS date
authors Mcalpine, A.S., Bailey, S.
compound source
symmetry
R_factor
R_Free 0.18367
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.82
ligand 6MO, O, PGD enzyme
related structures by homologous chain: 1DMS, 1EU1
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (1dmr.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 1DMR
  • CSU: Contacts of Structural Units for 1DMR
  • Likely Quarternary Molecular Structure file(s) for 1DMR
  • Structure Factors (609 Kb)
  • Retrieve 1DMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMR from S2C, [Save to disk]
  • Re-refined 1dmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DMR, from MSDmotif at EBI
  • Genome occurence of 1DMR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmr_2, region 3-625 [Jmol] [rasmolscript] [script source]
        - Domain d1dmr_1, region 626-781 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dmr_A] [1dmr]
  • SWISS-PROT database: [Q52675]
  • Domain organization of [DMSA_RHOCA] by SWISSPFAM
  • Other resources with information on 1DMR
  • Community annotation for 1DMR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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