1DMT Hydrolase date Dec 15, 1999
title Structure Of Human Neutral Endopeptidase Complexed With Phos
authors C.Oefner, A.D'Arcy, M.Hennig, F.K.Winkler, G.E.Dale
compound source
Molecule: Neutral Endopeptidase
Chain: A
Fragment: Extracellular Domain
Synonym: Neprilysin, Nep, Enkephalinase, Common Acute Lymph Leukemia Antigen;
Ec: 3.4.24.11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicz-Alpha
symmetry Space Group: P 32 2 1
R_factor 0.195 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.580 107.580 112.840 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, NAG, RDF, ZN BindingDB enzyme Hydrolase E.C.3.4.24.11 BRENDA
related structures by homologous chain: 1R1H, 1Y8J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human neutral endopeptidase (Neprilysin) complexed with phosphoramidon., Oefner C, D'Arcy A, Hennig M, Winkler FK, Dale GE, J Mol Biol 2000 Feb 18;296(2):341-9. PMID:10669592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1dmt.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (1dmt.pdb2.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 1DMT
  • CSU: Contacts of Structural Units for 1DMT
  • Likely Quarternary Molecular Structure file(s) for 1DMT
  • Retrieve 1DMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMT from S2C, [Save to disk]
  • View 1DMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DMT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dmt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dmt_A] [1dmt]
  • SWISS-PROT database: [P08473]
  • Domain organization of [NEP_HUMAN] by SWISSPFAM
  • Other resources with information on 1DMT
  • Community annotation for 1DMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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